Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015816700.1_cds_XP_016498927.1_12899
CDS Infomation

[gene=LOC107817588] [db_xref=GeneID:107817588] [protein=pentatricopeptide repeat-containing protein At4g16390, chloroplastic] [protein_id=XP_016498927.1] [location=complement(14614..16680)] [gbkey=CDS]
Sequence

ATGGCGTCTACTCCAAGCTCTACACTATTATCTCCTCTCTACGAATCCAACACCTTCTGC
AACTTCACTTCTCTCCAAAAACTCAGCTTTCCCCTCAACAACAAGCTTCTTCACTCGAAA
TCTGTTACCTTAACAACAACCCATGTCTCATTACAAGAACAATCCGACATTTCAAATCCC
ACTAATCCCCGAAAAACCGCATCTTCCTCAAAAAGTAGCTACATCTGGGTCAATCCCCAA
AGCCCCAAAGCTTCTCAGTTGAGGCAAAAATCTTACGATTCCAGGTATGCTTCCTTAGTG
AAAATGGCTGAGTCTTTGGATTCTTGTAATCCTGTAGAGGAAGATATGTTTAACGTTTTA
GCTGCTTTGGGTGATAAAGTAGTAGAACAAGATGCTGTGGTGATTTTGAATAACATGTCT
AATGCTGAAACTGCATTGTTAGTTTTGAAATACTTTCAACAAAGGTTGAAATTGAGCAAA
GAGGTGATTATTTATAACGTGACATTGAAAGTTTTGAGGAAAAGTAAGGATTTGGACAGA
GCAGAGAAGTTGTTTGATGAAATGCTTCAAAGAGGGGTGAAGCCTGATAATGTAACTTTC
TCTACCATTATTAGTTGTGCTAGGCAGTGCAATTTGCCTGAAAAAGCTATTGAATGGTTC
GAAAAGTTGCCTTCTTTTGGGTGTGAACCCGATGATGTGACTTACTCTGTGATGATTGAT
TCGTATGGTAAGGCTGGTAATGTAGATATGGCATTGAATTTGTATGATCGTGCGAGAACA
GAGAAGTGGCGTATAGATGCTGTGACGTTTGCTACGCTGATTAGGATTTATGGGGCTGCT
GGAAATTTTGATGGGTGCTTGAATGTGTACGAGGAAATGAAAGCGCTTGGTGTGAGGCCT
AATATGGCTGTGTATAACAGTTTGTTGGATGCTATGGGAAGAGCTAAGAGGCCATGGCAG
GCGAAGAACATTTATGCGGACATGATAAGCAATGGGTTCCAACCAAGTTGGGGTACCTAT
GCTTCCCTCATTCGGGCCTATGGTAGGGCTCGTTATAGTGAAGATGCTCTTAAGATCTAT
AGAGAAGTGAAGGAGAAGGGATTGGAGCTGAGTGTGGTGCTATATAATACTCTTCTGGCA
ATGTGTGCTGATGTGGGGCTTACAGATGAGGCTGTTAACATTTTTGAGGAGATGAAAGCC
TCAGGGACTTGCCAACCTGACAGTTGGACGTACTCTTCTCTAATCACCATAAACTCTTGT
AGTGGGAAGGTCTCGGAGGCGGAGGCCACATTGAACGAGATGATGGAAGCAGGGTTTGAT
CCAAATATCTTTGTCCTGACCTCACTCATCCAGTGTTATGGAAAAGCAGGTCGGACAGAT
GATGTTGTAAGAACGTTTGATAGACTGTCAGATTTGGGATTATCTCCAGATGAGCGCTTT
ACTGGTTGTCTTCTTAATGTGTTGACGCAAACACCAAAGGAAGATCTTCATAAGCTGACT
GTCTGCCTTGAGAAGGCAAATCCGAAGCTTGGTTATGTGGTGAAACTCCTGGTGGATGAA
GAGGCTGTTGAAGAAGGGATTTTTAAGAAACATGCTGCTGAAATTTTGGATTGTGTAACT
ACTGATGTCCAGAAAGCTTACTGCAACTGTTTGATTGACATCTGCGTCAACCTTAATCAG
TTGGAGAGAGCTTGTGAGTTGTTAGATATTGGGCTAACCCTCAACATCTATGCAGATATT
CAATCTCGAACTGCAACTCAATGGTCTTTACAGTTGAAGAGCCTCTCTCTTGGGGCAGCT
TTAACAGCATTACACATCTGGATGAATGATTTGAACAAAGCGCTTGAAAATGGGGAAGAG
TTCCCGTCACTGCTTGGAATCAACACAGGACATGGAAAACATAAATATTCTGAGAAAGGT
CTGGCAGGAGTATTTGAGTCGCACCTTAAAGAATTGAACGCTCCATTCCATGAGGCACCA
GACAAGGCCGGGTGGTTTTTGACTACAAAAGTTGCAGCTATATCATGGTTGGAGTCTAGA
CGTGCTCAAGAGGTGGTTGCTGCTTAG

Peptide Sequence

PEP ID

XP_016498927.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Nicotiana tabacum]
Sequence

MASTPSSTLLSPLYESNTFCNFTSLQKLSFPLNNKLLHSKSVTLTTTHVSLQEQSDISNP
TNPRKTASSSKSSYIWVNPQSPKASQLRQKSYDSRYASLVKMAESLDSCNPVEEDMFNVL
AALGDKVVEQDAVVILNNMSNAETALLVLKYFQQRLKLSKEVIIYNVTLKVLRKSKDLDR
AEKLFDEMLQRGVKPDNVTFSTIISCARQCNLPEKAIEWFEKLPSFGCEPDDVTYSVMID
SYGKAGNVDMALNLYDRARTEKWRIDAVTFATLIRIYGAAGNFDGCLNVYEEMKALGVRP
NMAVYNSLLDAMGRAKRPWQAKNIYADMISNGFQPSWGTYASLIRAYGRARYSEDALKIY
REVKEKGLELSVVLYNTLLAMCADVGLTDEAVNIFEEMKASGTCQPDSWTYSSLITINSC
SGKVSEAEATLNEMMEAGFDPNIFVLTSLIQCYGKAGRTDDVVRTFDRLSDLGLSPDERF
TGCLLNVLTQTPKEDLHKLTVCLEKANPKLGYVVKLLVDEEAVEEGIFKKHAAEILDCVT
TDVQKAYCNCLIDICVNLNQLERACELLDIGLTLNIYADIQSRTATQWSLQLKSLSLGAA
LTALHIWMNDLNKALENGEEFPSLLGINTGHGKHKYSEKGLAGVFESHLKELNAPFHEAP
DKAGWFLTTKVAAISWLESRRAQEVVAA

Transcript Sequence

Gene sequence data has not been registered.